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But what is the function of hydrochloric acid in stomach. It also eliminates bacteria and viruses in the stomach protecting your body from infection. Hydrochloric Acid In The Stomach And Digestive Problems Owlcation Generally your stomach will have HCL to maintain the pH level 1-2 in the stomach. Hydrochloric acid digestion . HCl is naturally present in the stomach and is vital for digestion of proteins. Hydrochloric Acid or HCL is a natural substance that is essential for proper digestion. It also prevents digestive problems by limiting yeast parasites viral and bacterial infections. Thus the role of stomach acid is quite critical in digestion. Its a very strong acid and makes the interior of the stomach strongly acidic. Hypochlorhydria is the medical term for a low level of stomach acid. Functions of Hydrochloric Acid in Stomach 1. HCl is naturally present in the stomach and is vital for digestion of proteins. The acidic environment created by HCl helps in preve